WorkflowClinical Development

Clinical Protocol Authoring

Clinical protocol authoring that starts from the schedule of assessments and scores every visit for patient burden

A checked first-draft protocol in days, in your approved language.

See one case, screen by screen ↓
demo58%of the VLT-302 first draft reused from final protocols, every passage with its document, version and page
demo4checksfound in the sample draft before any reviewer saw it — the Week 16 endpoint gap among them
demo70 → 57Week 4 patient burden after one suggestion: the liver panel drawn with the PK sample
target4daysfrom synopsis to a checked first draft
The problem

Why a protocol takes weeks to write and still gets amended

Before a trial can start, a medical writer turns a nine-page synopsis into a protocol of 90 to 120 pages in the sponsor's template: objectives and estimands, eligibility, intervention, assessments, safety, statistics, oversight, and the schedule of assessments that ties them together. Most of it is copied by hand from the last protocol on the same drug, then changed line by line, while the writer chases the clinical lead, the biostatistician and the medical monitor for the decisions the synopsis leaves open.

What slips through comes back as an amendment. A schedule adapted from a Phase 2 study whose primary endpoint was at Week 12 still has no PASI at Week 16; a contraception period says 20 weeks in Section 5 and 16 weeks in Section 9. And nobody adds up what a visit asks of a patient — the minutes on site, the blood drawn, the needle sticks — until sites say Week 4 is too long, after the first participants are enrolled.

typical45%of substantial protocol amendments are avoidable
typical$535Kmedian direct cost of one Phase 3 substantial amendment
typical76%of protocols amended at least once
Where a protocol's writing days goestimated
By hand38 days
With the solution4 days
  • Reading the synopsis and finding the closest past protocol2 → 0.1 d
  • Copying and adapting approved language, section by section14 → 1 d
  • Writing new text from the synopsis10 → 1.5 d
  • Building the schedule of assessments5 → 0.5 d
  • Cross-checking sections, synopsis and schedule5 → 0.5 d
  • Chasing open questions with clinical, statistics and safety2 → 0.4 d

Estimated split, in working days, for a Phase 3 protocol from synopsis to first draft — by hand (about 38 days, the by-hand median on the solution's sample dashboard) and with the solution (the 4-day target).

How it works

How a protocol moves

Six specialist agents read, reuse, write, check and score every visit; a medical writer approves each section.

What comes in
Synopsis in1 synopsis · + approved protocols and template
Agents at work
Synopsis reader31 fields
Then
Approved-language retrieverfinal protocols only
Then
Section writer14 sections in parallel
Then
Consistency checkersynopsis ↔ draft ↔ schedule
Patient burden scorerevery visit, 0–100
Then
Open-question collectorto named people
A person decides
Medical writerapproves each section
What comes out
Draft protocol
Burden per visit
Source on every reused passage
One case, step by step

One Phase 3 protocol, from synopsis to sections ready to approve

VLT-302 is a Phase 3 trial of Veltrimab, an anti-IL-23p19 antibody, in moderate-to-severe plaque psoriasis: 660 participants randomised 2:1 at about 120 sites in 14 countries, with co-primary endpoints PASI 90 and sPGA 0/1 at Week 16. Lena Ortiz, senior medical writer, owns the protocol. Here is what happens, screen by screen, in the working solution.

  1. 01Oct 6 · 08:12

    The synopsis, read into 31 fields

    Synopsis reader

    Synopsis v1.0 arrives from clinical development: nine pages. The synopsis reader pulls design, population, objectives, endpoints, dosing, visits and sample size as 31 fields, each with the page it came from, and highlights the passages it used. The closest approved protocols are ranked beside it: VLT-201 at 92% match (same drug and population, Phase 2), VLT-115 at 71%, CRV-201 at 54%.

    The synopsis reader quotes endpoint wording, never paraphrases it, and never infers a timepoint the synopsis does not state.

  2. 0208:14

    The protocol opens on its schedule of assessments

    Lena Ortiz · Senior medical writer

    Two minutes later the first draft exists: 14 sections in the sponsor template v3.2 (ICH M11), 58% of it approved language. Lena's screen is Table 1 — 11 visits across, 15 procedures down, a patient burden bar over every visit — with each section drafting live beside it and the share written from approved language. The consistency checker has already found the first problem.

    “Week 16 is the co-primary endpoint visit, but PASI, sPGA and BSA are not scheduled there.” — adapted from VLT-201, whose primary visit was Week 12.

  3. 03One click

    Every visit scored, with the arithmetic shown

    Patient burden scorer

    Lena clicks “Add them at Week 16” and the scores go in; Section 1.3 follows, saved as v0.2. Then she opens Day 1, the hardest visit: eligibility, PASI, sPGA, BSA, DLQI, vital signs, laboratory tests, pregnancy test, the PK sample, anti-drug antibodies and the first injection, with 15 minutes of check-in and waiting — 1 h 55 min on site, 21 mL of blood, 2 needle sticks.

    “Score = 0.25 × 115 min + 0.6 × 21 mL + 9 × 2 sticks = 59. Draws taken together count as one stick. Your limit is 60.”

  4. 04Safety request SR-03

    A liver panel at Weeks 2, 4 and 8

    Dr. Priya Raman · Medical monitor

    The medical monitor asks for a liver panel — ALT, AST, ALP, GGT, bilirubin, INR — at Weeks 2, 4 and 8. Lena adds it from “+ Add assessment”: the source is CRV-201 §8.3, approved language with the weeks adapted, and Week 2 is a new visit.

    “The patient burden of each visit is re-scored as soon as it is added; Section 8.3 is written from the source shown.”

  5. 05Re-scored

    Week 4 jumps to 70 — over the limit of 60

    Patient burden scorer

    The new Week 2 visit scores 26. Week 4 now carries a third needle stick and 15 more minutes, and its bar turns red at 70. The scorer proposes the smallest change that brings it back: take the liver panel from the pre-dose PK draw — the same venipuncture, one stick fewer, two more tubes to the central lab. Weeks 2 and 8 stay as their own draw.

    “Patient burden scorer · you or Omar Haddad decide.” The scorer proposes; it never applies a suggestion or drops an endpoint or safety assessment.

  6. 06Accepted

    Back to 57, and the protocol text follows

    Lena Ortiz · Senior medical writer

    Lena clicks “Combine with the PK draw”. Week 4 is back to 57, under the limit; Sections 1.3 and 8.3 are rewritten and the draft is saved as v0.4. With the liver panel, blood over the whole trial is 146 mL; the most in any 8 weeks is 68 mL, against the 550 mL limit.

    “Week 4 back to 57 · one needle stick fewer · saved as v0.4.”

  7. 07Section 8

    Every passage shows where it came from

    Section writer

    Section 8, Assessments and Procedures, shows each passage's origin: reused verbatim from VLT-201 Amendment 1 v3.0 pages 41 and 42, adapted from CRV-201 page 49 with every changed word marked, or new from the synopsis. Section 8.3 now reads: “At Week 4 it is taken from the same venipuncture as the pre-dose PK sample.” Each source opens at its passage.

    The section writer never invents a number and never hides a change: new text cites the synopsis.

  8. 08Before review

    Mismatches found, both passages shown

    Consistency checker

    The Week 16 finding is marked fixed — accepted by Lena Ortiz, saved as v0.2. Three remain: the contraception period is 20 weeks in Section 5.1 and 16 weeks in Section 9.4, reused from VLT-201; Section 8.1 allows ±3 days through Week 16 while the schedule footnote allows ±7 days; and sPGA is used in Section 1.1 before it is spelled out. Each comes with one suggested fix to accept or dismiss with a reason.

    The consistency checker proposes; it never applies a fix itself.

  9. 09Open questions

    One question per decision, to the right person

    Open-question collector

    What the synopsis does not settle becomes a question for a named person: Dr. Maya Chen on whether prior biologic use should be capped, Sam Patel on the testing order for the key secondary endpoints, Dr. Priya Raman on whether a data monitoring committee is needed, and Dr. Maya Chen again on whether the Week 16 switch is blinded. Each answer is written back into its section with name and time.

    “VLT-201 excluded participants with more than two prior biologics. The synopsis says nothing. The draft keeps the cap of two.”

  10. 10Approve and sign

    The writer approves each section; the head of writing signs

    Lena Ortiz and Dana Okafor

    Lena approves the protocol section by section; after her, each section goes to its reviewer — Sam Patel for objectives and estimands, Dr. Maya Chen for population and intervention, Omar Haddad for the schedule and procedures, Dr. Priya Raman for safety. When all 14 are approved, a full consistency re-check runs, the team reviews, and the draft goes to Dana Okafor, head of medical writing, for e-signature with a reason; the version is then locked. On the Protocols list, VLT-212 is at that point: 14 of 14 sections approved, in team review.

    Every version is kept; nothing is overwritten.

Who it’s for

Built for everyone who signs off a protocol.

The same protocol, seen by the five people who write, review and sign it — what their weeks looked like, and what they look like now.

LO
Lena OrtizSenior medical writer · owns five protocols at once
Senior medical writer
Before
“I copy from VLT-201 and pray I changed every Week 12 to Week 16.” Writes from synopses and chases reviewers for every open decision.
Now
Opens a sourced first draft on its schedule of assessments, fixes what the checker found and approves each section herself.
OH
Omar HaddadClinical operations lead · reviews the schedule and procedures
Clinical operations lead
Before
“Sites will tell me Week 4 is too long — after we've enrolled 200 people.”
Now
Sees every visit's burden score and its arithmetic before the draft goes out, and decides on burden suggestions with the writer.
PR
Dr. Priya RamanMedical monitor · reviews the protocol's safety section
Medical monitor
Before
“I need the liver panel — I don't care how you schedule it.”
Now
Her safety request lands in the schedule and in Section 8.3 at the weeks she asked for, written from approved language.
MC
Dr. Maya ChenClinical lead, dermatology · reviews population and intervention
Clinical lead, dermatology
Before
“Tell me what you changed from the last study, not the whole document.”
Now
Gets one question per decision — cap prior biologics, blind the Week 16 switch — and sees every changed word marked against VLT-201.
DO
Dana OkaforHead of medical writing · signs the final version
Head of medical writing
Before
“Every reused sentence has a source, or it does not go out.”
Now
Signs a version where every reused passage carries its document, version and page, and sees days to first draft and inconsistencies caught across the portfolio.
Built on the engine

6 agents. Each with one job, and hard limits.

Six specialist agents read, reuse, write, check and score every visit; a medical writer approves each section.

Synopsis reader

Reads a trial synopsis and pulls out design, population, objectives, endpoints, dosing, visits and sample size as 31 structured fields, each with the exact wording and the page it came from.

  • Quotes endpoint wording, never paraphrases it
  • Never infers an endpoint timepoint that is not stated — marks it as missing
Approved-language retriever

Finds approved passages in final protocols that fit each section, ranked by population, phase and therapeutic area, and returns each with its document, version, page and the differences the writer must see.

  • Final protocols only — drafts and superseded versions are never a source
  • Never strips the source; flags sources later amended
Section writer

Writes each template section from the synopsis fields and the retrieved passages — 14 writers in parallel, in the sponsor template and house style. Reuses a passage verbatim when it fits and marks every changed word when it does not.

  • No invented numbers — new text cites the synopsis
  • Changed words always marked; what it cannot decide goes to a named person
Consistency checker

Checks the draft against the synopsis and itself: endpoint timepoints against the schedule of activities, objectives against endpoints and estimands, eligibility, dose and regimen, visit windows and abbreviations. For each mismatch it shows both passages and proposes one fix.

  • Proposes, never applies a fix
  • Every finding shows both passages
Patient burden scorer

Scores every visit in the schedule of assessments for minutes on site, blood drawn and needle sticks or injections, on the weights in Settings, and proposes the smallest change that brings a visit back under the limit: combine draws, move a procedure to an adjacent visit, or use a local lab.

  • Proposes, never applies a suggestion
  • Never drops an assessment an endpoint or safety rule depends on
  • Shows the arithmetic behind every score
Open-question collector

Turns gaps in the synopsis into short questions for the right person and writes the answers back into the section.

  • One question per decision
  • Never decides on someone's behalf; answers recorded with name and time
Medical writer

Approves every section. The agents propose; a named person decides.

Every screen

The working solution, as it ships.

13 screens from the working solution, on its sample data. Pick one to see it large.

Schedule of assessmentsVisits across, procedures down, a patient burden bar over every visit, the section each row is written in, and the 14 sections drafting live beside it.
One visit's burden, broken downDay 1: every procedure with its minutes, blood and sticks, and the arithmetic behind the score of 59 against the limit of 60.
Add an assessmentThe liver panel from safety request SR-03 at Weeks 2, 4 and 8, with the approved language it will be written from.
A visit over the limitWeek 4 at 70 after the liver panel, and the scorer's suggestion to draw it with the pre-dose PK sample — for the writer or clinical operations to decide.
Back under the limitWeek 4 at 57, Sections 1.3 and 8.3 rewritten, the draft saved as v0.4 and the change in the latest changes.
The synopsis, readThe passages the agents drafted from, highlighted, and the closest approved protocols ranked by match.
A section with its sourcesSection 8 with each passage marked reused, adapted or new, and the source documents open at their pages.
Consistency checksEach mismatch with both passages and one suggested fix, to accept or dismiss with a reason.
Open questionsWhat the synopsis leaves open, as one question per decision for a named reviewer, answered in one click.
ProtocolsTen open protocols with their stage, sections approved, checks to fix, owner and due date.
Library of final protocols38 final protocols and 412 approved passages — the only language the agents may reuse, with how often each was reused.
DashboardVisits over the burden limit, median days to first draft, where the draft text came from, inconsistencies caught by type and amendments by year.
SettingsBurden limit and weights, the 8-week blood limit, template and style, section reviewers, reuse rules and consistency checks.
Governance

Built for protocols that have to stand up: sourced, approved, signed.

Every reused passage keeps its sourceEach reused or adapted passage carries its document, version and page, and opens at that passage. The setting is always on, and the Word export carries the sources as comments or in an appendix.
Only final protocols are a sourceLanguage is reused only from final, approved protocols — drafts and superseded versions never. Language from protocols later amended is flagged, so the writer sees the amendment before reusing it.
A named person approves every sectionAgents draft, check and propose. The medical writer approves each section, then its named reviewer; a burden suggestion is accepted only by the writer or the clinical operations lead.
E-signature with a reason, then lockedWhen all 14 sections are approved, a full consistency re-check runs, the team reviews, and the head of medical writing signs the final version with a reason. The version is then locked.
Burden arithmetic in the openEvery visit's score shows its minutes, millilitres and sticks, and the 8-week blood total is held against the limit. The scorer may never drop an endpoint or safety assessment.
Every version and decision recordedEach fix accepted, check dismissed (with its reason), question answered and section approved is recorded with name, time and version. Nothing is overwritten, drafts stay in your environment, and models do not train on them.
Configuration

Your template, your limits, your reviewers

How visits are scored, which language may be reused and who decides are settings — every change applies to new scores and drafts.

SettingDefaultChoose from
Burden limit per visit60Up or down in steps of 5, from 30 to 90 — every visit is re-scored
Burden weights0.25 / min · 0.6 / mL · 9 / stick0.25 / min · 0.6 / mL · 9 / stick · 0.2 / min · 0.8 / mL · 12 / stick
Blood drawn in any 8 weeks550 mL550 mL · 400 mL · 10.5 mL/kg
Who decides on a burden suggestionOmar Haddad · Clinical operations leadA named person — the suggestion is never applied on its own
Protocol templateSponsor template v3.2 (ICH M11)Sponsor template v3.2 (ICH M11) · Sponsor template v3.1 (legacy)
Word exportSources as Word commentsSources as Word comments · Clean copy, sources in an appendix
Oldest language allowed5 years1 to 15 years since the source protocol was finalized
Consistency checks6 of 7 onEndpoint timepoints in the schedule · objectives ↔ endpoints ↔ estimands · eligibility · dose and regimen · visit windows · abbreviations · references in Section 14
Connections

Works with the documents a protocol is already written from

Trial synopsisWord or PDF, read into 31 fields with their pages
Past approved protocolsfinal protocols and their amendments, the only source of reusable language
Protocol templateyour sponsor template, its sections, headings and standard text (ICH M11)
Style guidespelling, abbreviations, tense and units
Procedure burden tableminutes, millilitres of blood and needle sticks per procedure
Word exportthe draft protocol with its sources as Word comments or in an appendix
What it changes

The difference, in numbers.

Every figure is labelled: a target the solution is built to, an estimate, a typical published result, or a proven one.

target
4days
from synopsis to a checked first draft
By hand≈ 38 days
With agents≈ 4 days
target
70 → 57
Week 4 burden after one suggestion: the liver panel drawn with the PK sample
Liver panel on its own70 · over limit
With the PK draw57
typical
45%
of substantial amendments are avoidable, at a median $535K each in Phase 3
avoidable amendments, caught in the draft

“demo” = seen in the working solution, on its sample protocol data · “target” = the design goal, measured in the live solution · “estimated” = our estimate · “typical” = published figures (Tufts CSDD protocol amendment studies, 2016 and 2024 — 45% of substantial amendments avoidable, a median $535,000 direct cost per Phase 3 amendment, 76% of protocols amended; Tufts CSDD / ZS patient burden studies; ICH M11). People, studies, drugs and sponsors named on this page are fictional — characters and sample data in the working solution.

Questions

What medical writing and clinical teams ask us.

What is clinical protocol authoring software?

Software that helps medical writers turn a trial synopsis into a full protocol in the sponsor's template. Clinical Protocol Authoring adds six agents that read the synopsis, reuse approved language from final protocols with its source, write the sections, build the schedule of assessments, check the draft against the synopsis and score every visit for patient burden. The medical writer approves every section.

Does it work with the ICH M11 template?

Every draft follows your protocol template — its sections, headings and standard text. In the working solution that is a sponsor template v3.2 built on ICH M11, with 14 sections, and the template is a setting.

How does it reuse language from past protocols?

The approved-language retriever searches final protocols only, preferring the same drug and population. A passage is reused verbatim when it fits; when it is adapted, every changed word is marked. Each passage keeps its document, version and page, and language from protocols later amended is flagged.

How is the patient burden score calculated?

For each visit: 0.25 points per minute on site, 0.6 per mL of blood and 9 per needle stick or injection, with draws taken together counted once. A visit above the limit — 60 by default — is flagged with the smallest change that brings it back, and the blood drawn in any 8 weeks is held against 550 mL. The weights and limit are settings.

What inconsistencies does it catch?

Endpoint timepoints missing from the schedule of activities, objectives that do not match endpoints and estimands, eligibility that differs from the synopsis population, dose and regimen that differ between Section 6 and the schedule, visit windows that disagree, and abbreviations used before they are spelled out. Each finding shows both passages and one proposed fix.

Do people stay in control of the protocol?

Yes. The agents draft, check and propose; none of them applies a fix or a burden suggestion on its own. The medical writer approves every section, named reviewers follow, and the head of medical writing signs the final version with a reason before it is locked.

Can we export the draft to Word?

Yes. The draft exports to Word with its sources as Word comments, or as a clean copy with the sources in an appendix.

How long does it take to go live?

The Agentic Solution Engine builds and deploys it from your requirements and documents — your protocol template, style guide, procedure burden table and a set of your final protocols — and it goes live once every quality gate has passed. We will walk you through it on one of your own synopses first.

See it on
your next synopsis.

We'll run Clinical Protocol Authoring on one of your synopses, your template and a sample of your final protocols.